Rather than overthink the whole process of how to mount the PE deck, I dove right in and actually started to work with the pieces.
I soon realized that simple methods are much easier & less stressful than the overly-complicated ways I had tried to plan out.
Amazingly, I was able to make some quick progress and actually completed 1 deck section rather quickly.
Using 0.030" styrene, I made baseplates that matched the kit deck... and it's a LONG deck.
There was lots of tracing, scribing, and sanding to make baseplates that fit the hull, and match the PE decks that sit atop of them.
After cutting a PE deck section from the sheet (and trimming to size), I used CA to glue 'ribs" underneath the PE deck to raise it off the baseplate to the proper height. Careful placement of the ribs was necessary to ensure they were not visible through the holes/gap in the PE deck. For the riser ribs, I used Evergreen #8204 HO scale 2x4 (0.022" thick, 0.043" high).
The deck "sandwiches" would bring the PE deck to the proper height in the hulls. Bazinga!
Then I had to take the plunge and start cutting up the kit deck... aaaaaarrrrrrggggghhhhhhhhhh!!!
I needed to cut out the schnorkel well, and also the 2 torpedo storage tube bulges on the rear deck.
No turning back now!